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Information

Name: Tests of T4 subgroups of E. coli phages on EPEC and ETEC strains
Life Domain: bacteria
Publication: Open it
Description: This experiment was realized by checking for lysis in test tubes.
The phages are T4 phages representing four of the five known subgroups of T4 coliphages whose genomes were all sequenced.
The strains are Escherichia coli strains, for which some are Enteropathogenic Escherichia coli (EPEC) and others Enterotoxigenic Escherichia coli (ETEC). E. coli K12 was used as a reference.
These strains were collected at the Division of Enteric Pathogens of the Central Public Health Laboratory, Enteric division, Colindale, London/UK during the 1970s (kindly provided by B. Rowe) associated with infant diarrhea.
This work was published in Virology, 2009, Denou.
Visibility: Public
Owner: Quentin Lamy-Besnier Contact owner
Creation Date: April 23, 2020, 11:55 a.m.
Last Edition Date: Jan. 21, 2021, 7:54 a.m.

Content

Viruses	6
Hosts	26
Responses	156

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The file to fill is a double-entry table (see example on the right) where rows are viruses and columns are hosts, and for which the infection status is entered as a number. The recommended values to use are: 0 ( No infection), 1 ( Intermediate) and 2 ( Infection), but you will later be able to map any value used to this global scheme.

More information can be found in the documentation.

	E. coli MG1655 (NC_000913.3)	E. coli O157:H7 (AE005174.2)
T4 (NC_000866.4; HER:27)	2	0
T7 (NC_001604.1)	1	2
MyVirus	2	1

download example file

Response scheme used

Original response	Response mapped
0.0	No infection
2.0	Infection

Viruses

JS10(EU863409; TAX:576790), JS98(NC_012741; TAX:576790), JSE(EU863408; TAX:576789), RB49(NC_005066; TAX:50948), RB69(NC_004928; TAX:12353), T4(NC_000866.4; TAX:10665; HER:27)

Hosts

E. coli K12(HG738867; TAX:1403831), E. coli O111:K58(EPEC), E. coli O112:K66(EPEC), E. coli O114:H49(EPEC), E. coli O115:H51(ETEC), E. coli O119:K69(EPEC), E. coli O124:K72(EPEC), E. coli O125:K70(EPEC), E. coli O127:K63(EPEC), E. coli O128:H18(ETEC), E. coli O128:K67(EPEC), E. coli O148:H28(ETEC), E. coli O153:H12(ETEC), E. coli O15:H11(ETEC), E. coli O18:77(EPEC), E. coli O20:H11(ETEC), E. coli O25:H42(ETEC), E. coli O26:K60(EPEC), E. coli O27:H7(ETEC), E. coli O44:K74(EPEC), E. coli O55:K59(EPEC), E. coli O63:H-(ETEC), E. coli O6:H16(ETEC), E. coli O78:H12(ETEC), E. coli O86:K61(EPEC), E. coli O8:H9(ETEC)