Data Source Explore it

Information
Name
Host Range of Phages of Pseudomonas syringae
Life Domain
bacteria
Publication
Open it
Description
The experiments were mainly conducted between April 2023 and July 2024 at the Plant Pathology Unit of INRAE (France) by Lola Chateau, Chloé Feltin, and Clara Torres-Barceló.

The host range analysis was performed in liquid culture using optical density measurements in 96-well plates over 48 hours. Bacterial strains were grown to exponential phase (OD₆₀₀ = 0.01, corresponding to ~10⁷ CFU/mL) in phosphate buffer and diluted in King’s B (KB) medium to a final concentration of 10⁵ CFU/mL. Phage suspensions were standardized to 10⁷ PFU/mL in SM buffer. In each well, 180 µL of bacterial culture was mixed with 20 µL of phage solution, resulting in a multiplicity of infection (MOI) of 10.

Optical density (OD₆₀₀) was measured every 5 minutes over 48 hours at 25 °C using a SPECTROstar Omega plate reader (BMG Labtech, France), with intermittent orbital shaking (200 RPM for 200 seconds followed by 400 seconds of rest).

Bacterial growth inhibition was quantified as the percentage reduction in bacterial growth in the presence of phage, calculated as:
Inhibition (%) = 100 × (AUC_bacteria – AUC_phage) / AUC_bacteria,
where AUC refers to the empirical area under the growth curve.

The inhibition values reported here are the averages of three biological replicates for each phage–bacterium interaction (i.e., three independent bacterial populations).

The dataset includes 23 phages (from the 25 described in Feltin et al., 2024) and 44 bacterial strains belonging to four phylogroups of the Pseudomonas syringae species complex. Genomes of bacteria have been deposited under the BioProject accession number PRJNA1292126.

Phages informations:
Clones Species Genera Genome size (pb) % GC Terminis Morphology % of known functions Number oftRNA Isolation bacterial strains Accession GenBank
Arace01 Aravirus cervantes 76 815 51% DTR (short) podovirus 53.57 2 19B PP179312
Aurca01 Aurigavirus capella 57 369 58% - siphovirus 43.62 0 CC1557 PP179334
Cruim01 Cruxvirus imai 55 644 58% - siphovirus 42.53 0 CC1557 PP179333
Cygsa01 Cygnusvirus sadr 166 013 57% - myovirus 27.73 3 JD03 PP179332
Draal01 Dracovirus altais 43 777 56% Headful (pac) podovirus 51.72 0 CC0094 PP179322
Draal02 Dracovirus altais 43 779 56% - podovirus 43.86 1 CC0094 PP179321
Draal03 Dracovirus altais 43 779 56% - podovirus 43.86 1 CC0094 PP179319
Drael01 Dracovirus eltanin 42 756 56% Headful (pac) podovirus 53.70 0 CC0094 PP179320
Ghual01 Ghunavirus alcor 41 446 56% Headful (pac) podovirus 73.47 0 P3.01.09C09 PP179313
Ghuch01 Ghunavirus chalawan 41 728 56% DTR (short) podovirus 72.00 0 CC0663 PP179330
Lyrsu01 Lyravirus sulafat 47 123 52% New podovirus 37.88 1 USA0011 PP179323
Lyrsu02 Lyravirus sulafat 47 123 52% New podovirus 37.88 1 USA0011 PP179324
Nican01 Nickievirus ankaa 112 436 57% DTR (long) siphovirus 28.48 5 CC0094 PP179318
Orimi01 Orionvirus mintaka 46 001 55% - myovirus 43.42 0 7C PP179326
Orisa01 Orionvirus saiph 45 336 54% - myovirus 46.67 0 7C PP179329
Orisa02 Orionvirus saiph 45 363 54% - myovirus 47.30 0 7C PP179328
Orisa03 Orionvirus saiph 44 995 54% - myovirus 47.06 0 7C PP179327
Pavpe01 Pavovirus peacock 44 080 53% Headful (pac) siphovirus 61.11 0 P4.01.01C03 PP179316
Pyxpy01 Pyxisvirus pyxidis 101 236 46% DTR (short) myovirus 32.35 19 P1.01.01B03 PP179310
Pyxpy02 Pyxisvirus pyxidis 99 504 46% DTR (short) myovirus 34.55 6 19B PP179311
Touem01 Toucanavirus emiw 91 577 58% Headful (pac) myovirus 32.81 0 7C PP179325
Ulina01 Uliginvirus naos 47 685 56% DTR (short) podovirus 68.75 0 CC0440 PP179315
Ulitu01 Uliginvirus tureis 47 775 56% DTR (short) podovirus 68.09 0 P4.01.01C03 PP179317

Bacteria informations :
Phylogroup Clade Strain name Isolation location groups Isolation location Isolation country Isolation date
PG01 PG01a 19B Diseased apricot Symptoms on diseased apricot France 2011
PG01a DG1A_21 Diseased apricot Symptoms on diseased apricot France 2015
PG01a DG12_20 Diseased apricot Symptoms on diseased apricot France 2015
PG01a SZ0049 Environment Snow France 2009
PG01a DGA5F1-1 Healthy plant Apricot leaves France 2017
PG01a P3.01.09C09 Healthy plant Apricot twigs France 2014
PG01b CC1429 Environment Biofilm USA 2004
PG01b AF0015 Environment Water NewZelande 2003
PG01b USA0007 Environment Water USA 2007
PG01b CC1559 Environment Snow France 2006
PG02 PG02b 11C Diseased apricot Symptoms on diseased apricot France 2011
PG02b 41A Diseased apricot Symptoms on diseased apricot France 2011
PG02b 41D Diseased apricot Symptoms on diseased apricot France 2011
PG02b DG1A_7 Diseased apricot Symptoms on diseased apricot France 2015
PG02b P4.01.01.C03 Diseased apricot Symptoms on diseased apricot France 2014
PG02b CC1434 Environment Biofilm France 2005
PG02b GAB0016 Environment Biofilm France 2010
PG02b CCE0067 Environment Water France 2009
PG02b USA0087 Environment Water USA 2007
PG02b USA0088 Environment Water USA 2007
PG02d 1B Diseased apricot Symptoms on diseased apricot France 2011
PG02d 7C Diseased apricot Symptoms on diseased apricot France 2011
PG02d DG12_6 Diseased apricot Symptoms on diseased apricot France 2015
PG02d GAW0049 Environment Water France 2010
PG02d GAW0089 Environment Water France 2010
PG02d USA0005 Environment Water USA 2007
PG02d CST0086 Environment Rain France 2010
PG02d MAFF302273PT   Healthy plant Maple USA 1939
PG07 PG07a 3A Diseased apricot Symptoms on diseased apricot France 2011
PG07a 93D Diseased apricot Symptoms on diseased apricot France 2011
PG07a DG8_15 Diseased apricot Symptoms on diseased apricot France 2015
PG07a CEB0023 Environment Biofilm France 2010
PG07a CSZ0341 Environment Water France 2009
PG07b FMU-107 Healthy plant Cabbage China 1986
PG10 PG10a CC1583 Environment Biofilm France 2006
PG10a CEB0083 Environment Biofilm France 2010
PG10a SZB0008 Environment Biofilm France 2009
PG10a SZ0119 Environment Water France 2007
PG10a CSZ0293 Environment Snow France 2009
PG10a JFJ0040 Environment Snow Switzerland 2014
PG10a DGA9CS5-15 Healthy plant Landcover of apricot France 2017
PG10a DGA9CS5-8 Healthy plant Landcover of apricot France 2017
PG10a DGA11F1-15 Healthy plant Apricot leaves France 2017
PG10a DGA11F1-17 Healthy plant Apricot leaves France 2017
Visibility
Public
Provided By
Chloé Feltin
Creation Date
June 17, 2025, 10:36 a.m.
Last Edition Date
Dec. 1, 2025, 1:30 p.m.
Content
Viruses 23
Hosts 44
Responses 1012
Response scheme used
Original response Response mapped
0.0 No infection
0.00596049443837904 No infection
0.021556914593123 No infection
0.0329831254251443 No infection
0.0423916354387442 No infection
0.098314429942514 No infection
0.0995148672474283 No infection
0.107221357668576 No infection
0.150418803865661 No infection
0.158199914009682 No infection
0.160351615826668 No infection
0.18063042266368 No infection
0.186342823498286 No infection
0.192645038742691 No infection
0.193616200099536 No infection
0.20342215971843 No infection
0.22634480892081 No infection
0.228360771873611 No infection
0.230372032501067 No infection
0.24285755175274 No infection
0.26856221172227 No infection
0.295435032646527 No infection
0.315978386214603 No infection
0.316063260539618 No infection
0.328821249832988 No infection
0.330199499432101 No infection
0.333779440071034 No infection
0.347861226885959 No infection
0.366273968950957 No infection
0.372391039764876 No infection
0.387462420180012 No infection
0.389726405257389 No infection
0.393798560729029 No infection
0.412409939521025 No infection
0.448226873341317 No infection
0.463855540147482 No infection
0.466427622081091 No infection
0.485591533204878 No infection
0.487458585930214 No infection
0.533850512931006 No infection
0.537163353339068 No infection
0.55397497030173 No infection
0.570113116100575 No infection
0.577963057411098 No infection
0.583264607948473 No infection
0.591585724058708 No infection
0.60596436507223 No infection
0.636275655732683 No infection
0.662216232357307 No infection
0.68234354414003 No infection
0.686840139860857 No infection
0.689373313770881 No infection
0.700424687526373 No infection
0.703370803148414 No infection
0.709953441649728 No infection
0.719971326250633 No infection
0.724999687425143 No infection
0.742912036760838 No infection
0.744671465610388 No infection
0.756801595694141 No infection
0.774839521119394 No infection
0.779092136511087 No infection
0.785747198056375 No infection
0.828544310610626 No infection
0.838027486965539 No infection
0.855652786792571 No infection
0.862648353400674 No infection
0.865225392681712 No infection
0.882919504660424 No infection
0.898202984892209 No infection
0.903445942847779 No infection
0.907217931388946 No infection
0.910691740795518 No infection
0.924822452848899 No infection
0.931607678270812 No infection
0.932642707694841 No infection
0.949821578030784 No infection
0.952294676305428 No infection
0.960503801363573 No infection
0.962653061371842 No infection
0.982621981578781 No infection
1.00356630378946 No infection
1.01234588032747 No infection
1.02920981355817 No infection
1.03750559133829 No infection
1.06290670370723 No infection
1.12959476734295 No infection
1.1688197564019 No infection
1.17353069918546 No infection
1.18048995999677 No infection
1.20934186285853 No infection
1.21337641501433 No infection
1.24132418345269 No infection
1.34927152225737 No infection
1.39118695552341 No infection
1.40016232513767 No infection
1.42125290460643 No infection
1.44162826554778 No infection
1.47784051152801 No infection
1.50062476141692 No infection
1.51441186955267 No infection
1.55326227054495 No infection
1.57120254060364 No infection
1.61601606160876 No infection
1.62433015047746 No infection
1.62615002213573 No infection
1.63009568880335 No infection
1.68184715559449 No infection
1.73991397807276 No infection
1.76306420563135 No infection
1.77095170318152 No infection
1.77783105318944 No infection
1.82328214657771 No infection
1.8330429333718 No infection
1.90543676040587 No infection
1.99881772847244 No infection
2.01592329457683 No infection
2.02962905460578 No infection
2.04172547290918 No infection
2.04621178498801 No infection
2.09354962572403 No infection
2.10217092291056 No infection
2.12804033686298 No infection
2.13188158439672 No infection
2.1382151061034 No infection
2.13840689469629 No infection
2.15015572876432 No infection
2.16405037602366 No infection
2.18701584368596 No infection
2.18778081486801 No infection
2.2115095756541 No infection
2.27674433709436 No infection
2.30742915739819 No infection
2.34243710924824 No infection
2.35968436519688 No infection
2.36213488278069 No infection
2.43052732616618 No infection
2.47016195660714 No infection
2.48461657691035 No infection
2.49680592735519 No infection
2.49723027662008 No infection
2.50679149522881 No infection
2.50971329960115 No infection
2.52548839485538 No infection
2.54226049979661 No infection
2.55790106721933 No infection
2.56538686748933 No infection
2.57395634225134 No infection
2.58520723318448 No infection
2.58744523749183 No infection
2.63686610490378 No infection
2.67905294857157 No infection
2.68412682071131 No infection
2.70794853175811 No infection
2.74248063808179 No infection
2.75073845459968 No infection
2.75853242704027 No infection
2.79149456964682 No infection
2.79365658162234 No infection
2.80430756790884 No infection
2.81771565168324 No infection
2.83185120528213 No infection
2.83447272824883 No infection
2.8414457670156 No infection
2.86356279095101 No infection
2.86366407023055 No infection
2.90229666211422 No infection
2.92120341760417 No infection
2.93374489977619 No infection
2.94428199012322 No infection
2.9531184395751 No infection
2.9825201993058 No infection
2.99008736161601 No infection
3.03890033298953 No infection
3.0840720529695 No infection
3.11868661493675 No infection
3.14265091035798 No infection
3.16673776080142 No infection
3.17109119996456 No infection
3.18935133804666 No infection
3.19496561674516 No infection
3.29084129799738 No infection
3.301937459304 No infection
3.30765697243205 No infection
3.32507097183049 No infection
3.3945935952015 No infection
3.40878327697566 No infection
3.46891879928682 No infection
3.50568166937715 No infection
3.56092659755514 No infection
3.56668347342154 No infection
3.59531691198805 No infection
3.68463314361571 No infection
3.69572607085719 No infection
3.72519334633363 No infection
3.73719805122724 No infection
3.74207885025508 No infection
3.75064127782367 No infection
3.7778617907521 No infection
3.77818145348699 No infection
3.79485867424471 No infection
3.82748456399996 No infection
3.84598090780637 No infection
3.86778692383651 No infection
3.87736280242604 No infection
3.95698223532789 No infection
3.96858428840215 No infection
3.99602956019333 No infection
4.02274078552798 No infection
4.02515286033059 No infection
4.07936150574418 No infection
4.160016380356 No infection
4.22731058968481 No infection
4.23795568878246 No infection
4.27032137076353 No infection
4.28530357022659 No infection
4.29345695949113 No infection
4.30640148073844 No infection
4.34287736176277 No infection
4.39802687793985 No infection
4.46085309707 No infection
4.46919395438613 No infection
4.50053643204893 No infection
4.52158901801904 No infection
4.52553371383488 No infection
4.59872325378637 No infection
4.68005048536455 No infection
4.7110403497914 No infection
4.73950198541397 No infection
4.76358427694224 No infection
4.77193311119761 No infection
4.78276230441185 No infection
4.7912652901673 No infection
4.83674819217469 No infection
4.88641722077487 No infection
4.95741942231182 No infection
4.9787976989426 No infection
5.13820333815671 No infection
5.19207316207428 No infection
5.21010234118798 No infection
5.22892777266817 No infection
5.25227811546196 No infection
5.28492428525127 No infection
5.37495783999113 No infection
5.39412053849295 No infection
5.41700905715242 No infection
5.46456799492297 No infection
5.55209960786142 No infection
5.67412032663156 No infection
5.78321718596922 No infection
5.7932440887375 No infection
5.81001750263551 No infection
6.00665030496413 No infection
6.11405336015126 No infection
6.15044599276697 No infection
6.19416249385827 No infection
6.21454235274222 No infection
6.23644596198824 No infection
6.25574232940833 No infection
6.31692022665814 No infection
6.39259829603477 No infection
6.51051392039174 No infection
6.57796227833629 No infection
6.60794229504533 No infection
6.61727006270515 No infection
6.66883844514556 No infection
6.6909016050373 No infection
6.73899844829974 No infection
6.74366856372579 No infection
6.96278843820732 No infection
6.97030327409084 No infection
7.05243388192568 No infection
7.05325737632966 No infection
7.06859595713131 No infection
7.1027187045654 No infection
7.11432017047103 No infection
7.1818961809665 No infection
7.21253704743456 No infection
7.40814833142741 No infection
7.42642103215052 No infection
7.51300455100685 No infection
7.58376402828339 No infection
7.69808375266496 No infection
7.88398800923524 No infection
7.91091536432381 No infection
8.09144647906564 No infection
8.0924185888415 No infection
8.14633833556007 No infection
8.26836937147532 No infection
8.32466615416393 No infection
8.32481605263279 No infection
8.33998026848426 No infection
8.48811372848637 No infection
8.62096489592612 No infection
8.62932187358003 No infection
8.66872403224921 No infection
8.68214557680368 No infection
8.74563766125961 No infection
8.81704484669236 No infection
8.81813678120148 No infection
8.90606189913139 No infection
8.91699902032701 No infection
9.03921366439584 No infection
9.07947355491146 No infection
9.1344129173679 No infection
9.18707648918624 No infection
9.35972397062505 No infection
9.4575236221686 No infection
9.49053054269834 No infection
9.5231747652244 No infection
9.61224503068017 No infection
9.71854114284443 No infection
9.74151360327464 No infection
9.7569885212013 No infection
9.78555550810082 No infection
9.80786735679826 No infection
9.83367043703718 No infection
9.85607480822948 No infection
9.9954873514009 No infection
10.0391972852118 No infection
10.1825808280814 No infection
10.7375138406059 No infection
10.8373594112929 No infection
10.9676778288189 No infection
11.1518617881271 No infection
11.1716930960398 No infection
11.2041564991304 No infection
11.3395422310455 No infection
11.4464800118323 No infection
11.455203202017 No infection
11.5227493738232 No infection
11.5406218476728 No infection
11.5785072580971 No infection
11.6107976855729 No infection
11.7255967210147 No infection
11.8140733675731 No infection
11.9653402928498 No infection
12.0153251883362 No infection
12.1087036466857 No infection
12.1227211148245 No infection
12.2631435638424 No infection
12.3875043171077 No infection
12.6976571533952 No infection
12.844496010819 No infection
12.8935804048911 No infection
13.1755908498007 No infection
13.3665121497818 No infection
13.4149027589564 No infection
13.4388840936789 No infection
13.4470694162083 No infection
13.4890535069815 No infection
13.5223014970519 No infection
13.572705637836 No infection
13.9729668254837 No infection
14.0237976404259 No infection
14.1726574082956 No infection
14.2931843160782 No infection
14.4040680783795 No infection
14.6690976654263 No infection
15.3922151534387 No infection
15.6286010842942 No infection
15.8744019738097 No infection
15.9338371148664 No infection
15.9378356649496 No infection
16.1594002851727 No infection
16.3945464006846 No infection
16.4073739141675 No infection
16.5221549361875 No infection
16.7835292196693 No infection
16.860298817306 No infection
17.1603505855132 No infection
17.2253174058114 No infection
17.3050928587527 No infection
17.5688003384447 No infection
17.6131103696333 No infection
17.6491666174436 No infection
17.7106162944603 No infection
17.7306380090863 No infection
17.7571724484261 No infection
18.5023279719896 No infection
18.9419498712503 No infection
18.9814539879509 No infection
18.9952416226524 No infection
19.0043409332761 No infection
19.3769823400605 No infection
19.3795404792962 No infection
19.3970800749628 No infection
19.6012401472913 No infection
19.8978096955603 Intermediate
20.097152158547 Intermediate
20.2196766877919 Intermediate
20.2739917570293 Intermediate
20.3623338732859 Intermediate
20.3738725561559 Intermediate
20.3951693240069 Intermediate
20.841332268719 Intermediate
20.9900613502797 Intermediate
21.5541897486348 Intermediate
21.730366415991 Intermediate
21.7402989028983 Intermediate
21.8677006537601 Intermediate
21.938782116333 Intermediate
22.0114164065929 Intermediate
22.3659318307493 Intermediate
22.4187474534046 Intermediate
22.4328745234622 Intermediate
22.6050240140613 Intermediate
22.6140735594034 Intermediate
22.6841235191791 Intermediate
22.7644702918212 Intermediate
22.9957035763109 Intermediate
23.0350765242701 Intermediate
24.504249244267 Intermediate
24.5447151393919 Intermediate
24.547184885102 Intermediate
24.6618228578646 Intermediate
24.9408270074226 Intermediate
25.1340890997782 Intermediate
25.4134304758274 Intermediate
25.6569613021118 Intermediate
25.7756777429597 Intermediate
26.7574427720522 Intermediate
26.7746745014142 Intermediate
26.9190129450412 Intermediate
27.1415888829911 Intermediate
27.6335508850588 Intermediate
27.8041838117557 Intermediate
27.8563172372842 Intermediate
28.2870536141508 Intermediate
28.7661685126483 Intermediate
28.8259432586061 Intermediate
29.3508552454864 Intermediate
29.7807373971677 Intermediate
30.4987755976429 Intermediate
30.5540377864844 Intermediate
31.2220425878689 Intermediate
31.3891545093381 Intermediate
31.5749757552337 Intermediate
31.5840162688187 Intermediate
31.6963408785943 Intermediate
31.7785778868489 Intermediate
32.0435143445695 Intermediate
32.5068053423817 Intermediate
33.5328403423592 Intermediate
34.2186954916392 Intermediate
34.8377888794856 Intermediate
34.9099184182424 Intermediate
35.0161472214717 Intermediate
35.0551621895369 Intermediate
36.4833031472797 Intermediate
37.0565160730023 Intermediate
37.2012058353465 Intermediate
37.6491117835775 Intermediate
37.7695606647749 Intermediate
37.8735355364055 Intermediate
38.5845686866319 Intermediate
39.4702609043802 Intermediate
39.4865194266246 Intermediate
39.7497500863594 Intermediate
40.4067072951911 Intermediate
40.5092973850958 Intermediate
41.0984001030812 Intermediate
41.2469073393392 Intermediate
41.4514745863288 Intermediate
41.8085395624435 Intermediate
42.1332903069837 Intermediate
42.4996284395556 Intermediate
42.7178301923571 Intermediate
42.8400649003842 Intermediate
42.8972861942929 Intermediate
42.9668117672027 Intermediate
43.13177878229 Intermediate
43.5201395165225 Intermediate
43.8013542444607 Intermediate
43.9124297953179 Intermediate
44.0803312064132 Intermediate
44.1043459817737 Intermediate
45.197689855962 Intermediate
45.214109804691 Intermediate
45.3414440702111 Intermediate
45.4979171495475 Intermediate
45.50639347687 Intermediate
45.7208566894318 Intermediate
46.1139428852239 Intermediate
46.4953832382383 Intermediate
47.275425182039 Intermediate
47.3479107945571 Intermediate
47.7759180319835 Intermediate
49.0724072692076 Intermediate
49.2393820348855 Intermediate
49.5308797663492 Intermediate
51.1569325506663 Intermediate
51.8855284774881 Intermediate
51.9803292912289 Intermediate
52.2609690445554 Intermediate
52.3370891427944 Intermediate
52.5780339058278 Intermediate
53.4599841297661 Intermediate
53.5323754734105 Intermediate
53.5568133598268 Intermediate
53.9753084317306 Intermediate
54.541864116847 Intermediate
54.6721645145722 Intermediate
54.8078007485138 Intermediate
54.8528139866859 Intermediate
55.0303451044736 Intermediate
55.6067470685796 Intermediate
57.1367880723522 Intermediate
57.5543418339435 Intermediate
57.927598235991 Intermediate
59.597377905882 Intermediate
60.961971530626 Intermediate
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99.8526124197991 Infection
99.8835401661336 Infection
99.918836230295 Infection
99.9509408083758 Infection
99.9876399623078 Infection
100.0 Infection