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Information

Name: Tests of the E. coli LF82_P10 phage on AIEC strains and Enterobacteria
Life Domain: bacteria
Publication: Open it
Description: Host range tests performed by Luisa De Sordi, Post-doc in Debarbieux lab.
Technique: spotting phages on bacterial overlay (in exponential phase) on LB plates.
Phage LF82_P10 was isolated from sewage using Escherichia coli strain LF82 (clinical strain associated to Crohn's disease).
The bacterial strains tested include E. coli strains from both AIEC and lab collections as well as Citrobacter rodentium, Erwinia carotovora, Rouxiella chamberiensis and Serratia marcescens.
This work was published in Cell Host & Microbe, 2017, De Sordi.
Visibility: Public
Owner: Laurent Debarbieux Contact owner
Creation Date: Sept. 30, 2019, 4:37 p.m.
Last Edition Date: Jan. 25, 2021, 4:27 p.m.

Content

Viruses	1
Hosts	105
Responses	105

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The file to fill is a double-entry table (see example on the right) where rows are viruses and columns are hosts, and for which the infection status is entered as a number. The recommended values to use are: 0 ( No infection), 1 ( Intermediate) and 2 ( Infection), but you will later be able to map any value used to this global scheme.

More information can be found in the documentation.

	E. coli MG1655 (NC_000913.3)	E. coli O157:H7 (AE005174.2)
T4 (NC_000866.4; HER:27)	2	0
T7 (NC_001604.1)	1	2
MyVirus	2	1

download example file

Response scheme used

Original response	Response mapped
0.0	No infection
1.0	Infection

Viruses

LF82_P10(LT717094; TAX:562)

Hosts

Citrobacter rodentium ICC180, E. coli 042, E. coli 536(NC_008253.1; TAX:362663), E. coli 55989(NC_011748.1; TAX:585055), E. coli AL505(NZ_CVTE01000001; TAX:562), E. coli BE, E. coli BW25113(CP009273.1; TAX:679895), E. coli CR63, E. coli E22, E. coli LF82(CU651637.1; TAX:591946), E. coli LM33(NZ_LN874954.1; TAX:562), E. coli MG1655(NC_000913.3; TAX:511145), E. coli MI/5, E. coli Nissle(CP007799.1; TAX:316435), E. coli OP50(NZ_CP059137.1), E. coli S15, E. coli Sp15, Erwinia carotovora 15, LF06011, LF06023, LF06024, LF06026, LF06027, LF06028, LF06029, LF06030, LF06031, LF06033, LF06072, LF06073, LF06075, LF06076, LF06087, LF06088, LF06089, LF06150, LF06151, LF06152, LF06166, LF06167, LF06168, LF06169, LF06170, LF06171, LF06172, LF06173, LF06254, LF06256, LF06259, LF06271, LF06278, LF06280, LF06281, LF06283, LF06351, LF06352, LF06353, LF06354, LF06356, LF06357, LF06358, LF06359, LF06360, LF06361, LF06362, LF06398, LF07003, LF07006, LF07035, LF07045, LF07046, LF07048, LF07049, LF07050, LF07051, LF07074, LF07075, LF07076, LF07077, LF07078, LF07081, LF07082, LF07086, LF07089, LF07090, LF07091, LF07093, LF07103, LF07107, LF07113, LF07126, LF07127, LF07128, LF07134, LF07135, LF07136, LF07137, LF110, LF31, LF50, LF73, NRG857c(NC_017634.1; TAX:685038), Rouxiella chamberiensis 130333(NZ_JRWU00000000.1; TAX:1513468), Serratia marcescens Db11(NZ_HG326223.1; TAX:273526), Serratia marcescens SM365