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Information

Name: Tests of LF82_P2, LF82_P6, LF82_P8 phages on the ECOR collection
Life Domain: bacteria
Publication: Open it
Description: Host range tests performed by Matthieu Galtier, PhD in Debarbieux lab.
Technique: spotting phages on bacterial overlay (in exponential phase) on LB plates.
LF82_P phages were isolated from sewage using Escherichia coli strain LF82 (clinical strain associated to Crohn's disease).
The ECOR collection is a set of 72 strains representative of the genetic diversity of the Escherichia coli genus.
This work was published in Journal of Crohn's and Colitis, 2017, Galtier.
Visibility: Public
Owner: Laurent Debarbieux Contact owner
Creation Date: April 22, 2020, 4:35 p.m.
Last Edition Date: Jan. 21, 2021, 8:07 a.m.

Content

Viruses	3
Hosts	73
Responses	219

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The file to fill is a double-entry table (see example on the right) where rows are viruses and columns are hosts, and for which the infection status is entered as a number. The recommended values to use are: 0 ( No infection), 1 ( Intermediate) and 2 ( Infection), but you will later be able to map any value used to this global scheme.

More information can be found in the documentation.

	E. coli MG1655 (NC_000913.3)	E. coli O157:H7 (AE005174.2)
T4 (NC_000866.4; HER:27)	2	0
T7 (NC_001604.1)	1	2
MyVirus	2	1

download example file

Response scheme used

Original response	Response mapped
0.0	No infection
0.01	Intermediate
1.0	Infection

Viruses

LF82_P2, LF82_P6, LF82_P8

Hosts

E. coli LF82(CU651637.1; TAX:591946), ECOR 1, ECOR 10, ECOR 11, ECOR 12, ECOR 13, ECOR 14, ECOR 15, ECOR 16, ECOR 17, ECOR 18, ECOR 19, ECOR 2, ECOR 20, ECOR 21, ECOR 22, ECOR 23, ECOR 24, ECOR 25, ECOR 26, ECOR 27, ECOR 28, ECOR 29, ECOR 3, ECOR 30, ECOR 31, ECOR 32, ECOR 33, ECOR 34, ECOR 35, ECOR 36, ECOR 37, ECOR 38, ECOR 39, ECOR 4, ECOR 40, ECOR 41, ECOR 42, ECOR 43, ECOR 44, ECOR 45, ECOR 46, ECOR 47, ECOR 48, ECOR 49, ECOR 5, ECOR 50, ECOR 51, ECOR 52, ECOR 53, ECOR 54, ECOR 55, ECOR 56, ECOR 57, ECOR 58, ECOR 59, ECOR 6, ECOR 60, ECOR 61, ECOR 62, ECOR 63, ECOR 64, ECOR 65, ECOR 66, ECOR 67, ECOR 68, ECOR 69, ECOR 7, ECOR 70, ECOR 71, ECOR 72, ECOR 8, ECOR 9