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Information

Name: Chloroviruses
Life Domain: eukaryote
Description: This data represents the host ranges for Chloroviruses in the collection of the James L. Van Etten lab at the University of Nebraska-Lincoln. The primary method of determining host range has been done by presence or absence of plaque formation via a plaque assay. Another method of determining host-virus interaction involves DNA staining to visualize infection initiation as described in Quispe et al, Virology, 2017. Furthermore, a liquid culture assay using high MOI (20) and low MOI (0.01) has been used to assess the cell-killing ability of the OSy-NE-5 virus on non-permissive host cells; the OSy-NE-5 virus initiates an unsuccessful infection on two Chlorella variabilis strains that kills the cells. The interactions are: 0 = no plaque formation, 1 = infection initiation/cell death, but no plaque formation, 2 = plaque formation. Chlorovirus isolates have been collected from fresh water sources globally. Many Chloroviruses have not had their host range tested. Host range data comes from past publications and unpublished results.

Van Etten JL, Lane LC, Meints RH (1991). Viruses and viruslike particles of eukaryotic algae. Microbiol. Rev. 55: 586-620.

Jeanniard A., Dunigan D.D., Gurnon J.R., et al. Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses. BMC Genomics 14, 158 (2013).

Quispe CF, Esmael A, Sonderman O, McQuinn M, et al. Characterization of a new chlorovirus type with permissive and non-permissive features on phylogenetically related algal strains. Virology 2017, 500, 103–113.

Quispe, Cristian F. "Expansion of the Chlorovirus Genus by Studies on Virus Natural History and Chlorella Host Metabolism" PhD diss., University of Nebraska-Lincoln, 2015 (http://digitalcommons.unl.edu/bioscidiss/78).

Dunigan DD, Al-Sammak M, Al-Ameeli Z, Agarkova IV, DeLong JP, Van Etten JL. 2019. Chloroviruses lure hosts through long-distance chemical signaling. J Virol 93:e01688-18.

Fitzgerald LA, Graves MV, Li X, Feldblyum T, Nierman WC, Van Etten JL. Sequence and annotation of the 369-kb NY-2A and the 345-kb AR158 viruses that infect Chlorella NC64A. Virology 2007, 358, 472-484.

Fitzgerald LA, Graves MV, Li X, Feldblyum T, Hartigan J, Van Etten JL. Sequence and annotation of the 314-kb MT325 and the 321-kb FR483 viruses that infect Chlorella Pbi. Virology 2007, 358, 459-471.
Visibility: Public
Owner: Roger Carlson Contact owner
Creation Date: July 1, 2020, 5:47 p.m.
Last Edition Date: July 22, 2020, 8:58 p.m.

Content

Viruses	121
Hosts	6
Responses	192

Download it

The file to fill is a double-entry table (see example on the right) where rows are viruses and columns are hosts, and for which the infection status is entered as a number. The recommended values to use are: 0 ( No infection), 1 ( Intermediate) and 2 ( Infection), but you will later be able to map any value used to this global scheme.

More information can be found in the documentation.

	E. coli MG1655 (NC_000913.3)	E. coli O157:H7 (AE005174.2)
T4 (NC_000866.4; HER:27)	2	0
T7 (NC_001604.1)	1	2
MyVirus	2	1

download example file

Response scheme used

Original response	Response mapped
0.0	No infection
1.0	Intermediate
2.0	Infection

Viruses

AL-1A, AL-2A, AL-2C, AN69C(JX997153.1; TAX:240269), AP110A(JX997154.1; TAX:1278246), AR158(NC_009899.1; TAX:380598), ATCV-1(NC_008724.1; TAX:322019), BJ-2C, Br0604L(JX997155.1; TAX:1278268), CA-1A, CA-1D, CA-2A, CA-4A, CA-4B, Can0610SP(JX997156.1; TAX:1278269), Can18-4(JX997157.1; TAX:1278252), Canal-1(JX997158.1; TAX:1278270), COS-CLP-F1, CVA-1(NC_044937.1; TAX:42683), CVB-1(JX997160.1; TAX:1278247), CVG-1(JX997161.1; TAX:1278248), CviKI(JX997162.1; TAX:1278253), CVM-1(JX997163.1; TAX:1278249), CVR-1(JX997164.1; TAX:1278250), CvsA1(JX997165.1; TAX:1278254), CZ-2(JX997166.1; TAX:1278251), FR483(NC_008603.1; TAX:399781), Fr5L(JX997167.1; TAX:1278255), GM0701.1(JX997168.1; TAX:1278271), GNLD22, IL-2A, IL-2B, IL-3A(JX997169.1; TAX:1278256), IL-3D, IL-5-2s1(JX997170.1; TAX:1278257), KS1B(JX997171.1; TAX:1278258), LP-F3a-4a, MA-1D(JX997172.1; TAX:1278259), MA-1E(JX997173.1; TAX:1278260), MN0810.1(JX997174.1; TAX:1278272), MO0605SPH(JX997175.1; TAX:1278273), MT325(DQ491001.1; TAX:346932), MWNE-1, NC-1A, NC-1B, NC-1C, NC-1D, N-CL-1, N-CL-2, NE-10B-s1, NE-11A-L1, NE-40-1-m, NE-40-2-s, NE-41-1-L, NE-41-2-m, NE-41-3-s, NE-8A, NE-8D, NE-JV-1(JX997176.1; TAX:1278261), NE-JV-2(JX997177.1; TAX:1278274), NE-JV-3(JX997178.1; TAX:1278275), NE-JV-4(JX997179.1; TAX:1278262), NE-P-1-L, NE-P-2-m, NE-P-3-s, NE-P-4-fs, NES-4A-m1, NES-4A-s1, NES-4B-L2, NES-5A-L1, NES-5A-m1, NES-5A-s1, N-NE-3, NTS-1(JX997180.1; TAX:1278276), NW665.2(JX997181.1; TAX:1278263), NY-2A(NC_009898.1; TAX:46021), NY-2B(JX997182.1; TAX:1278264), NY-2C, NY-2F, NYb-1, NYs-1(NC_043235.1; TAX:83442), O-NE-20, O-NE-21, O-NE-22, OR0704.2.2(JX997184.1; TAX:1278265), OR0704.3(JX997185.1; TAX:1278277), Osy-F-1, Osy-F-3, Osy-NE-1, Osy-NE-2, Osy-NE-3, Osy-NE-4, Osy-NE-4B-L2, Osy-NE-4B-m2, Osy-NE-4B-s2, Osy-NE-5(NC_032001.1; TAX:1917232), Osy-NE-5A-L1, Osy-NE-5B-m2, Osy-NE-5B-s1, Osy-NE-6, Osy-NE-7, Osy-NE-L1, Osy-NE-L2, Osy-NE-L3, Osy-NE-M2, Osy-NE-M3, Osy-NE-ZA1, PBCV-1(NC_000852.5; TAX:10506), P-NE-5, SC-1A, SC-1B, S-CL-1, SH-6A, Smith-1, TN603.4.2(JX997186.1; TAX:1278278), WI0606(JX997187.1; TAX:1278279), XZ-3A, XZ-4A, XZ-4C, XZ-5C, XZ-6E

Hosts

Chlorella heliozoae SAG 3.83, Chlorella variabilis F36-ZK(NIES 2540), Chlorella variabilis NC64A(ADIC00000000.1; TAX:554065), Chlorella variabilis OK1-ZK(NIES 2541), Chlorella variabilis Syngen 2-3(ATCC 30562), Micractinium couctrix Pbi(CCAP 211/83)